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Sunday the 21st of March, 2010 |
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mapm3 most recent diffversion 3.0
Scroll down toward the bottom of the page to get installation instructions for mapm3. The raw portfile for mapm3 3.0 is located here: http://mapm3.darwinports.com/dports/science/mapm3/Portfile Find related portfiles with the unique DarwinPorts.com search feature. Check for any related Fink projects here: pdb.finkproject.org/pdb/package.php/mapm3 The mapm3 Portfile 38771 2008-07-31 04:05:43Z ryandesign PortSystem 1.0 Name: mapm3 Version: 3.0 Revision: 3 Platform: darwin Maintainers: ryandesign openmaintainer Category: science Description: cli tool for calculating Quantitative Trait Loci Master Sites: http://www-genome.wi.mit.edu/ftp/distribution/software/mapmaker3/ distname ${name}-source extract.suffix .tar.Z Checksums: md5 8aa7a061d32a49c8704c1a5c4b31aa2d extract.mkdir yes extract.cmd uncompress extract.pre_args -c extract.post_args | tar -C ${worksrcpath} -xf - Patch Files: patch-iolib.h patch-xmapmaker patch-Makefile patch-system.h patch-xqtl configure { reinplace "s|^DIR= /usr/local/bin|DIR= ${prefix}/bin|g" "${worksrcpath}/Makefile" } pre-destroot { reinplace "s|^DIR= ${prefix}/bin|DIR= ${destroot}${prefix}/bin|g" "${worksrcpath}/Makefile" } post-destroot { xinstall -d ${destroot}${prefix}/libexec/${name} foreach prog {mapmaker qtl} { move ${destroot}${prefix}/bin/${prog} ${destroot}${prefix}/libexec/${name} xinstall -m 755 ${filespath}/wrapper.in ${destroot}${prefix}/bin/${prog} reinplace "s% } } Variant: large_datasets { post-patch { reinplace "s|^SYS= -D_SYS_DARWIN -DUSE_RAND48|SYS= -D_SYS_DARWIN -DUSE_RAND48 -D_BIG_DATASETS|g" "${worksrcpath}/Makefile" } } If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page. Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:
% cd /opt/local/bin/portslocation/dports/mapm3You will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to: Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using mapm3 with these commands: % man mapm3 Where to find more information:
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